PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492667.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23843.3 Da    PI: 10.4707
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF978.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_004492667.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
                    79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.945161IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-33382IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002652.79E-43377No hitNo description
PfamPF003194.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2682170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.5987177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVRGKTQLKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS  60
SMQDTIERYR RNSRSAQPMQ KSDEQNMQNL RQETASLMKK IELLEASKRK LMGEGLGSCS  120
MEELQQIEQQ LEKSVSTVRA RKNQVYKNQI VQLKEKEKAL LVENARLSKQ GMQPQQTTKD  180
QRENQPYAER SPSSDVVTEL FIGLHRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-19383282Myocyte-specific enhancer factor 2A
3kov_B5e-19383282Myocyte-specific enhancer factor 2A
3kov_I5e-19383282Myocyte-specific enhancer factor 2A
3kov_J5e-19383282Myocyte-specific enhancer factor 2A
3mu6_A5e-19369268Myocyte-specific enhancer factor 2A
3mu6_B5e-19369268Myocyte-specific enhancer factor 2A
3mu6_C5e-19369268Myocyte-specific enhancer factor 2A
3mu6_D5e-19369268Myocyte-specific enhancer factor 2A
3p57_A5e-19383282Myocyte-specific enhancer factor 2A
3p57_B5e-19383282Myocyte-specific enhancer factor 2A
3p57_C5e-19383282Myocyte-specific enhancer factor 2A
3p57_D5e-19383282Myocyte-specific enhancer factor 2A
3p57_I5e-19383282Myocyte-specific enhancer factor 2A
3p57_J5e-19383282Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1432160.0BT143216.1 Medicago truncatula clone JCVI-FLMt-5J8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492667.11e-150PREDICTED: MADS-box protein SOC1-like
SwissprotO646452e-88SOC1_ARATH; MADS-box protein SOC1
TrEMBLG7L1F71e-126G7L1F7_MEDTR; MADS-box transcription factor
STRINGGLYMA09G40230.31e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-80AGAMOUS-like 20